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Football Conference - 1999/2000
| | | P | W | D | L | F | A | +/- | Pts | |
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| 1 | Kidderminster Harriers | 42 | 26 | 7 | 9 | 75 | 40 | +35 | 85 | P |
| 2 | Rushden & Diamonds | 42 | 21 | 13 | 8 | 71 | 42 | +29 | 76 | |
| 3 | Morecambe | 42 | 18 | 16 | 8 | 70 | 48 | +22 | 70 | |
| 4 | Scarborough | 42 | 19 | 12 | 11 | 60 | 35 | +25 | 69 | |
| 5 | Kingstonian | 42 | 20 | 7 | 15 | 58 | 44 | +14 | 67 | |
| 6 | Dover Athletic | 42 | 18 | 12 | 12 | 65 | 56 | +9 | 66 | |
| 7 | Yeovil Town | 42 | 18 | 10 | 14 | 60 | 63 | -3 | 64 | |
| 8 | Hereford United | 42 | 15 | 14 | 13 | 61 | 52 | +9 | 59 | |
| 9 | Southport | 42 | 15 | 13 | 14 | 55 | 56 | -1 | 58 | |
| 10 | Stevenage Borough | 42 | 16 | 9 | 17 | 60 | 54 | +6 | 57 | |
| 11 | Hayes | 42 | 16 | 8 | 18 | 57 | 58 | -1 | 56 | |
| 12 | Doncaster Rovers | 42 | 15 | 9 | 18 | 46 | 48 | -2 | 54 | |
| 13 | Kettering Town | 42 | 12 | 16 | 14 | 44 | 50 | -6 | 52 | |
| 14 | Woking | 42 | 13 | 13 | 16 | 45 | 53 | -8 | 52 | |
| 15 | Nuneaton Borough | 42 | 12 | 15 | 15 | 49 | 53 | -4 | 51 | |
| 16 | Telford United | 42 | 14 | 9 | 19 | 56 | 66 | -10 | 51 | |
| 17 | Hednesford Town | 42 | 15 | 6 | 21 | 45 | 68 | -23 | 51 | |
| 18 | Northwich Victoria | 42 | 13 | 12 | 17 | 53 | 78 | -25 | 51 | |
| 19 | Forest Green Rovers | 42 | 13 | 8 | 21 | 54 | 63 | -9 | 47 | |
| 20 | Welling United | 42 | 13 | 8 | 21 | 54 | 66 | -12 | 47 | R |
| 21 | Altrincham | 42 | 9 | 19 | 14 | 51 | 60 | -9 | 46 | R |
| 22 | Sutton United | 42 | 8 | 10 | 24 | 39 | 75 | -36 | 34 | R |
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