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Isthmian League - 1945/1946
| | | P | W | D | L | F | A | +/- | Pts | |
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| 1 | Walthamstow Avenue | 26 | 21 | 0 | 5 | 100 | 31 | +69 | 42 | |
| 2 | Oxford City | 26 | 17 | 6 | 3 | 91 | 40 | +51 | 40 | |
| 3 | Romford | 26 | 15 | 3 | 8 | 83 | 59 | +24 | 33 | |
| 4 | Dulwich Hamlet | 26 | 14 | 2 | 10 | 63 | 59 | +4 | 30 | |
| 5 | Tufnell Park | 26 | 12 | 4 | 10 | 70 | 55 | +15 | 28 | |
| 6 | Woking | 26 | 10 | 7 | 9 | 56 | 51 | +5 | 27 | |
| 7 | Ilford | 26 | 12 | 2 | 12 | 56 | 71 | -15 | 26 | |
| 8 | Leytonstone | 26 | 11 | 3 | 12 | 61 | 75 | -14 | 25 | |
| 9 | Wycombe Wanderers | 26 | 9 | 3 | 14 | 80 | 88 | -8 | 21 | |
| 10 | Wimbledon | 26 | 7 | 6 | 13 | 52 | 72 | -20 | 20 | |
| 11 | Corinthian Casuals | 26 | 8 | 4 | 14 | 58 | 83 | -25 | 20 | |
| 12 | Clapton | 26 | 8 | 3 | 15 | 51 | 62 | -11 | 19 | |
| 13 | St Albans City | 26 | 6 | 6 | 14 | 48 | 85 | -37 | 18 | |
| 14 | Kingstonian | 26 | 6 | 3 | 17 | 48 | 86 | -38 | 15 | |
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